Publications

Allen, J.L., R.T. McMullin, Y. Weirsma, and C. Scheidegger. 2021. Population Genetics and Biogeography of the Lungwort Lichen in North America Support Distinct Eastern and Western Gene Pools. American Journal of Botany. doi: 10.1002/ajb2.1774

Plymale, A.E., J.R. Wells, C.I. Pearce, C.J. Brislawn, E.B. Graham, T.E. Cheeke, J.L. Allen, S.J. Fansler, B.W. Arey, M.E. Bowden, D.L. Saunders, V.G. Danna, K.J. Tyrrell, J.L. Weaver, R. Sjöblom, R. Paul, J.S. McCloy, E. Hjärthner-Holdar, M. Englund, E. Ogenhall, D.K. Peeler, and A.A. Kruger. 2021. Niche Partitioning of Microbial Communities at an Ancient Vitrified Hillfort: Implications for Vitrified Radioactive Waste Disposal. Geomicrobiology Journal 38: 36-56.

Allen, J.L. 2020. An annotated checklist of lichens reported from New York City since 1968. Memoirs of the Torrey Botanical Society 29: 141-155.

McKenzie, S.K., R.F. Walston, and J.L. Allen. 2020. Complete, high-quality genomes from long-read metagenomic sequencing of two wolf lichen thalli reveals enigmatic genome architecture. Genomics 112: 3150-3156.


Lendemer, J.L., and J.L. Allen. 2020. A revision of Hypotrachyna subgenus Parmelinopsis (Parmeliaceae) in eastern North America. The Bryologist 123: 265-332.

Hansen, C.J., J.C. Lendemer, E.A. Tripp, J.L. Allen, W.R. Buck, J.K. England, R.C. Harris, N.M. Howe, R.T. McMullin, D.P. Waters. 2020. Lichens and allied fungi of Central Alabama, U.S.A.: Survey results from the 26th Tuckerman Workshop. Opuscula Philolichenum 19: 36-57.


Plymale, A.E., J.R. Wells, C.I. Pearce, C.J. Brislawn, E.B. Graham, T.E. Cheeke, J.L. Allen, S.J. Fansler, B.W. Arey, M.E. Bowden, D.L. Saunders, V.G. Danna, K.J. Tyrrell, J.L. Weaver, R. Sjöblom, R. Paul, J.S. McCloy, E. Hjärthner-Holdar, M. Englund, E. Ogenhall, D.K. Peeler, and A.A. Kruger. 2020. Niche Partitioning of Microbial Communities at an Ancient Vitrified Hillfort: Implications for Vitrified Radioactive Waste Disposal. Geomicrobiology Journal DOI: 10.1080/01490451.2020.1807658


Allen, J.L., J.C. Lendemer, R.T. McMullin, and E. Tripp. 2019. Lichen Conservation in North America: A review of current practices and research in Canada and the United States. Biodiversity and Conservation. https://doi.org/10.1007/s10531-019-01827-3


Allen, J.L., and R.T. McMullin. 2019. Modeling algorithm influence on the success of predicting new populations of rare species: Ground-proofing models for the Pale-Belly Frost Lichen (Physconia subpallida) in Ontario. Biodiversity and Conservation https://doi.org/10.1007/s10531-019-01766-z.


Lendemer, J.C., and J.L. Allen. 2019. Hypotrachyna oprah (Parmeliaceae, Lichenized Ascomycota), a new foliose lichen with lichexanthone from southeastern North America. Castanea 84: 24-32.


Dorey, J.E., J.R. Hoffman, J.L. Martino, J.C. Lendemer, and J.L. Allen. 2019. First record of Usnea (Parmeliaceae) growing in New York City in nearly 200 years. Journal of the Torrey Botanical Society 146: 69-77.


England, J.K., C.J. Hansen, J.L. Allen, S.Q. Beeching, W.R. Buck, V. Charny, J.G. Guccion, R.C. Harris, M. Hodges, N.M. Howe, J.C. Lendemer, R.T. McMullin, E.A. Tripp, D.P. Waters. 2019. Checklist of lichens and allied fungi of Kathy Stiles Freeland Bibb County Glades Preserve, Alabama, U.S.A. Opuscula Philolichenum 18: 420-434.


Allen, J.L., S.K. McKenzie, R. Sleith, and E. Alter. 2018. First genome-wide analysis of the endangered, endemic lichen Cetradonia linearis reveals isolation by distance and strong population structure. American Journal of Botany 105: 1556-1567.


Vetsch, D., J.L. Allen, A. Belser, R. Boes, J. Brodersen, S. Fink, M.J. Franca, C. Juez, O. Nadyeina, C.T. Robinson, C. Scheidegger, A. Schleiss, A. Siviglia, C. Weber, and V. Weitbrecht. 2018. Lebensraum Gewässer-Sediment-dynamik und Vernetzung. Wasser, Energie, Luft 1: 19-24.


Allen, J.L. 2017. Testing lichen transplant methods for conservation applications in the Southern Appalachian Mountains, North Carolina, USA. The Bryologist 120: 311-319.


Lendemer, J.C., C.R. Anderson Stewart, B. Besal, J. Goldsmith, H. Griffith, J.R. Hoffman, B. Kraus, P. LaPoint, L. Li, Z. Muscavitch, J. Schultz, R. Schultz, and J.L. Allen. 2017. The lichens and allied fungi of Mount Mitchell State Park, North Carolina: A first checklist with comprehensive keys and comparison to historical data. Castanea 82: 69-97.


Allen, J.L., and J.C. Lendemer. 2016. Quantifying the impacts of sea-level rise on coastal biodiversity: A case study in eastern North America. Biological Conservation 202: 119-126.


Allen, J.L., and N. Howe. 2016. Landfill Lichens: A checklist for Freshkills Park, Staten Island, New York. Opuscula Philolichenum, 15: 82-91.


Allen, J.L., and J.C. Lendemer. 2016. Climate change impacts on endemic, high-elevation lichens in a biodiversity hotspot. Biodiversity and Conservation 22: 555-568.


McMullin, R.T., J.L. Allen, and J. Pagé. 2016. Physconia subpallida new to Québec, from Gatineau Park. Opuscula Philolichenum 15: 132-135.

Allen, J.L., and J.C. Lendemer. 2015. Fungal Conservation in the United States. Endangered Species Research 28: 33-42.


Allen, J.L., and J.C. Lendemer. 2015. Japewiella dollypartoniana, a new crustose lichen widespread in the Appalachian Mountains of eastern North America. Castanea 80: 59-65.

Allen, J.L., and R.T. McMullin. 2015. Chaenotheca balsamconensis, a new calicioid lichen on Trichaptum abietinum from North America that is benefiting from widespread conifer fatalities. The Bryologist 118: 54-58.


Allen, J.L., J.C. Lendemer, and T. McMullin. 2015. Cetradonia linearis. The IUCN Red List of Threatened Species 2015: e.T70386009A70386019. http://dx.doi.org/10.2305/IUCN.UK.2015-4.RLTS.T70386009A70386019.en.


Carvalho, A., G.V. Somner, and J.L. Allen. 2015. Is the phenology of all restinga species the same? A taxonomically-focused study of Sapindaceae in a highly threatened coastal environment. Flora 215: 92-101.


Lendemer, J.C., and J.L. Allen. 2015. Reassessment of Hypotrachyna virginica, an endangered, endemic Appalachian macrolichen, and the morphologically similar species with which it has been confused. Proceedings of the Academy of Natural Sciences of Philadelphia 164: 279-289.


Lendemer, J.C., J.L. Allen, and N. Noell. 2015. The Parmotrema Acid Test: a look at species delineation in the Parmotrema perforatum group forty years later. Mycologia 107: 1120-1129.


Marks, J.A., J. Pett-Ridge, S.S. Perakis, J.L. Allen, and B. McCune. 2015. Response of the nitrogen-fixing lichen Lobaria pulmonaria to phosphorus, molybdenum, and vanadium. Ecosphere 6:art155.


Hodkinson, B.P., J.L. Allen, L.L. Forrest, B. Goffinet, E. Sérusiaux, Ó.S. Andrésson, V. Miao, J.-P. Bellenger, and F. Lutzoni. 2014. Lichen-symbiotic cyanobacteria associated with Peltigera have an alternative vanadium-dependent nitrogen fixation system. European Journal of Phycology 49:11-19.


Lendemer, J.C., and J.L. Allen. 2014. Cryptic Biodiversity under threat from Sea-Level Rise in the North American Atlantic Coastal Plain. Bioscience 64: 923-931.


Allen, J.L., and J.C. Lendemer. 2013. Uncovering chemical variability: molecular data reveal the identity of a sterile crustose lichen from the Yukon and affirm an expanded circumscription for Buellia griseovirens. North American Fungi 8(12): 1-14.


Allen, J.L., B.P. Hodkinson, and C.R. Björk. 2012. A major range expansion for Platismatia wheeleri. North American Fungi 7(10): 1-12.

Allen, J.L., and J. Downs. 2009. Greetings from the chair. The Phlox Phlyer 15(1): 1.

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